Monday, September 30, 2013

New Shale Network Webinar

A HydroDesktop screenshot of sites in the Shale Network database.

Last week, Dr. Sue Brantley gave a presentation about the Shale Network as a part of the Penn State Water Resources Extension Webinar Series.

To view a recording of the presentation, or view the presentation slides as a .pdf, visit this page:


Monday, September 23, 2013

More Slides from the Open Water Symposium...


Last week, I posted Dr. Couch's slides from the Open Water Symposium in Brussels, but he was not the only member of the CUAHSI community presenting at the meeting. Dr. Daniel Ames, who leads HydroDesktop development, also gave an invited talk. Dr. Ames sent along the slides from his talk last week, entitled Open Source Tools for Hydrologic Data Management Sharing and Discovery: Introducing HydroDesktop and the CUAHSI Hydrologic Information System (HIS)...Swimming in Data Without Drowning in the Deluge, which I have also posted on the WDC Presentations page 


Friday, September 20, 2013

Want to Publish Data in the WDC Catalog....on Linux?

Tux is down with HIS...are you?
The CUAHSI staff have received multiple inquiries lately regarding the use of HIS software on Linux. While the majority of our applications have been developed in and for a Windows environment, these are not the only tools in our toolbox! Our primary data access tool (HydroDesktop) is still dependent on Windows, but if you are looking to publish data in the WDC Catalog from a Linux machine, HydroServer Lite is available and waiting for you!

HydroServer Lite is a lightweight version of HydroServer written in PHP. It can be deployed on any web hosting service that supports PHP and MySQL and is fully compatible with all of the other components of HIS. An existing example of HydroServer Lite being put to use in the WDC Catalog is out of Brigham Young University's Gil Ecosystem and Global Change Ecology Lab. The details of this data source can be seen here on the HIS Central website.

As always, if you have any questions or would like assistance in publishing your data, please email me!



Monday, September 16, 2013

Slides from Brussels...

Today, Dr. Couch spoke at the 2nd OpenWater Symposium in Brussels. This symposium "aims at sharing experiences, tools, training materials and model codes applicable in the water domain." Dr. Couch represented the WDC with his invited talk entitled Toward a Global Water Data Infrastructure: Lessons Learned and Future of the CUAHSI Hydrologic Information System

Click the link above to view Dr. Couch's slides, and if you'd like to see more presentations from the WDC Community visit the Presentations page on the WDC site.


Tuesday, September 3, 2013

Now Accepting Applications for 2013 Pathfinder Fellowships


Last week, the application period for the 2013 CUAHSI Pathfinder Fellowships opened. The Pathfinder Fellowship program is an avenue for CUAHSI to support graduate students in conducting field research. It enables students to travel to an additional field site to conduct comparative research, to collaborate with a research group using alternate approaches or modeling methods, or to work with researchers on adding an interdisciplinary dimension to a water science research project.

Want to know more about the research being enabled? Click here to check out the research that was done by the 2012 Pathfinder Fellows.

Want to apply? Visit the CUAHSI website to download the application materials.

Important Pathfinder Dates
  • Application period opens: August 28, 2013
  • Application due: October 18, 2013
  • Notification of recipients will be made by November 29, 2013
  • Travel funds will be available starting February 1, 2014
  • Travel must be completed by January 31, 2015


Wednesday, August 21, 2013

HydroDesktop Demo and World Water Week



Although it does not have any narration or sound, I've posted a new HydroDesktop demo video on YouTube. The video does not have any sound because I made it for inclusion in a looping powerpoint about the WDC that our Executive Director, Rick, will take with him to World Water Week in a couple weeks. Rick along with film researcher Linda Lilienfeld will be convening a seminar on Let's Talk About Water. For more about communicating water science through film, visit the Let's Talk About Water website.



Thursday, July 25, 2013

New Materials for STEM Education


I've created a new page for HIS laboratory exercises on the WDC website. At the moment, we have two substantial educational modules available that were developed using HydroDesktop Version 1.5. The first, which was developed at the Institute for Energy and Environmental Research at Wilkes University, examines water quality and water quantity in the Susquehanna River Basin with HydroDesktop. The second, developed at Brigham Young University Department of Civil and Environmental Engineering, utilizes R scripts to perform analyses (like flood probability) on data downloaded from the WDC catalog. If you have used HIS in your classroom, and are willing to share your materials, please let us know!



Tuesday, July 23, 2013

New Workshop Materials Available


Last week, CUAHSI hosted the 2013 Conference on Hydroinformatics and Modeling where we held four workshops. The materials for these workshops are now available on the WDC website:


  • HydroDesktop 1: Data Discovery - This workshop covers the basics in HydroDesktop; downloading, viewing, and exporting data.
  • HydroDesktop 2: Data Discovery & Analysis - This session repeats some of the material from HydroDesktop 1, but adds a statistical analysis component using R.
  • Data Publication with the WDC: Aside from asking CUAHSI to host your data, how can you publish data with the WDC? This exercise teaches participants how to configure SQL Server and load data into a SQL database, how to deploy WaterOneFlow Web Services, how to register your web service with the central catalog, and how to test your web service using both ODM Tools and HydroDesktop to view data. 
  • Writing Custom Plugins for HydroDesktop: Want to learn how you can extend the capabilities of HydroDesktop? Learn how to develop an extension...


Thanks to everyone who made it to Logan! We will also have the slides from presentations available online soon as well.


Monday, July 8, 2013

Key for Box & Whisker Plot Added to HydroDesktop User Guide

The HydroDesktop development team has created a key for Box and Whisker plots (an option on the Graph Ribbon), which I have posted under the Working with Data section of the User Guide...it can also be viewed above.


Monday, July 1, 2013

Research Poster: How New Data Sharing & Access Can Transform the Way We Address Water Resources and Hazards


Last week, CUAHSI staff members Dr. Jennifer Arrigo and Kayla Berry attended the 2013 AGU Science Policy Conference in Washington, D.C. At the conference, Jennifer and Kayla presented a poster highlighting CUAHSI's Water Data Center, HIS technology, and how data sharing can transform the way decision-makers can address water resource issues. View the poster above!


Tuesday, June 25, 2013

Last Week to Register Online for the 2013 CUAHSI Conference on Hydroinformatics and Modeling!


Online registration closes for the 2013 CUAHSI Conference on Hydroinformatics and Modeling this Sunday, June 30. If you have not done so, and are planning to attend, register today!

The conference will be held at Utah State University in Logan, Utah from July 17-19.
Confirmed Keynote and Invited Speakers Include:
  • Dr. Alva CouchInterim Director of the CUAHSI Water Data Center (Opening Keynote)
  • Dr. Stan AhaltRenaissance Computing Institute (RENCI) - PI of the Water Science Software Institute Conceptualization Project (Keynote)
  • Dr. Anthony Aufdenkampe, Stroud Water Research Institute and Principal Investigator on the CZO Data Project
  • Dr. Amarnath Gupta, San Diego Supercomputing Center (SDSC) - Semantics & Ontology, Examples from neuroscience
  • Dr. Praveen Kumar, University of Illinois, Urbana - SEAD Project
  • Dr. David Maidment, University of Texas at Austin - Leader of the CUAHSI HIS Project, 2008-2012 (Closing Keynote)
  • Dr. Emilio Mayorga, University of Washington - Addressing the intersection of biogeochemistry and (geo)informatics (Keynote)
  • Dr. Ramakrishna Nemani, NASA - NASA Earth Exchange (NEX)
  • Dr. Silvano PecoraItaly Institute for Environmental Protection & Research - Discussing deployment of HIS technology in Italy
  • Dr. Jordan ReadUS Geological Survey - USGS partnerships and innovations in modern hydroinformatics
  • Dr. David Tarboton, Utah State University, Extending HIS through the new HydroShare Project
  • Dr. Shaowen WangUniversity of Illinois, Creator of CyberGIS

In addition to the very accomplished presenters listed above, there will additional presenters, research posters, and a number of HIS related workshops. I will be leading:
  • HydroDesktop 1
  • HydroDesktop 2 
  • Publishing Data with the WDC

Dr. Daniel Ames, who is the lead developer of HydroDesktop, will also be leading a workshop on writing plugin tools for HydroDesktop.

Questions? Email me (jpollak@cuahsi.org) or CUAHSI's Communications and Outreach Specialist, Kayla Berry (kberry@cuahsi.org).

Hope to see you there! 



Monday, June 17, 2013

Data Sources Registered in the HIS Central Catalog

This week, I am working on updating metrics and visualizations for the HIS Catalog. Above, you can see one of these visualizations, which represents the total number of data sources registered in our central catalog. We are up to 104 data sources, which is almost four times the number we started with in 2008! The visualization above was created with IBM Many Eyes, which is a great, easy (and free!) tool to visualize data with.


Tuesday, June 4, 2013

Data Center Announcments

Today, we have a couple of announcements related to the Water Data Center. First, the new Data Center website is up and running at http://wdc.cuahsi.org. The website located at http://his.cuahsi.org will now become an archive of the HIS Research project, which was led by David Maidment (University of Texas at Austin) and concluded in 2011.

Additionally, in establishing the Data Center, we are in need of policies that will guide the vision and its operation. Drafts of these policies have been posted to this blog, and are available for comment until July 17. Please review these documents and post your comments today!



Monday, June 3, 2013

Shale Network Featured on NPR's State Impact

The Shale Network project was recently featured in a piece on NPR's State Impact with footage coming from the workshop that was held at PSU a couple weeks ago. The video, embedded below, has Dr. Sue Brantley (PI of the Shale Network) discussing their approach in creating an online database to enable research regarding the potential impacts of natural gas extraction on water in the Marcellus Shale region. I also got a few seconds on camera to do a quick plug for HIS!




Friday, May 31, 2013

Q&A with WDC Director Dr. Alva Couch


I recently sat down with the Director of the CUAHSI Water Data Center (and my boss!) for a brief Question and Answer session about the initial phases of WDC operations. Dr. Alva Couch is a professor of Computer Science at Tufts University and is on loan to CUAHSI to serve as the WDC Interim Director for the first year of the the WDC's operation...

Q: Who are you? What brought you to managing a national facility for water data?
A: I am a researcher in the relatively new area of systems and network management, with additional expertise in cloud computing, performance analysis, and software engineering. I became involved first with CUAHSI on the Ontology project that seeks to develop metadata vocabularies and ontologies to enable precise data search. My student, Alex Bedig, created a new ontology-driven user interface that is only practical because of performance engineering that decreases query response time by a factor of about 100. In the context of this development, I became aware of CUAHSI Hydrologic Information System (HIS) and consider it a worthy project to be sustained. I look forward to applying my skills in systems management, performance engineering, and software engineering to creating the next generation of data discovery, publication, and analysis tools.  I consider myself first and foremost a scientist, and hope to aid the worldwide community of water scientists in solving some of the world’s most pressing problems.

Q: What exactly is the Data Center? What is its relationship to the CUAHSI HIS?
A: The Water Data Center was born out of the efforts in creating the CUAHSI HIS. At the end of the HIS Project, HIS remained in prototype form. The first priority of the Water Data Center is to transform CUAHSI HIS from a prototype to a product. This entails re-engineering some features and processes for more robustness, re-hosting the main services in a robust cloud environment, and instituting management processes to ensure overall quality of data services and support.

Q: I’ve heard the Data Center will be providing researchers a whole bunch of new services, but what can I do now?
A: At this time, the WDC continues to support the core services developed during the CUAHSI HIS project, including catalog metadata search services and HydroServer data publication services using the WaterOneFlow (WOF) service model. There is no plan to deprecate these services; we will instead make them more reliable and useful. Thus, one can publish data using the current HydroServer software suite and it will continue to be accessible. One can register one’s data in the HIS Central catalog and it will continue to be discoverable. The new planned services are not a replacement for CUAHSI HIS; they are extensions of it.

Q: These data services sound great, but I don’t have appropriate access (or don’t know how) to manage a server. How can I publish my data?
A: At the present time, CUAHSI runs one data publication server HydroPortal that one can use to publish one’s data. Please contact Jon Pollak (jpollak@cuahsi.org) for more details on how to utilize this service. In the near future, we plan to move this service to the cloud and provide more general data publication tools, including a web portal for data upload. If you have data ready for publication, my advice would be not to wait-  let’s get it online now! The WDC staff will move it to the cloud later.

Q: If I’m already a user of HIS, should I be worried about how upcoming changes to the system might impact me and my work?
A: The Water Data Center is closely coordinating its activities with other CUAHSI affiliated activities such as HydroDesktop development to ensure that there is no disruption to the users in community. The short-term changes to services are enhancements that provide more detail on data and allow more detailed specification of searches. These enhancements will be made backward-compatible to older clients that do not have the ability to utilize the new features.

Q: If I need technical assistance, who should I contact?

A: In general, your first line of contact should be Jon Pollak (jpollak@cuahsi.org), our User Support Specialist. He will refer you to others in the Water Data Center team as appropriate to your needs. 


Tuesday, May 28, 2013

The 2013 Shale Network Workshop

The Shale Network database contains data from over 22,000 sites in the Marcellus Shale Region.

Last week, I visited State College, Pennsylvania to provide HIS related support at the 2013 Shale Network Workshop. The focus of this event was to bring together a number of stakeholders in the Marcellus Shale region to investigate potential impacts of natural gas extraction on water quality and water quantity. The Shale Network group is examining this question through the development of a database of applicable data. By publishing this database in HIS, the Shale Network can examine the data alongside our other data sources (including EPA and USGS), determine possible data gaps, and use HIS tools, such as HydroDesktop, to investigate what the data can reveal to researchers in addition to policymakers. View the workshop's materials by clicking the links below:


The Shale Network database presently contains over 669,700 total data values from 58,133 time series measured at 22,904 different sites.



Wednesday, May 22, 2013

Video: May's Informatics Call

I've posted the informatics call from a couple weeks ago on YouTube. It can also be seen embedded below:


The agenda for this call was:

1. Demo of the Open Hydrospheric Modeling Framework (OHMF)Xu Liang (Pittsburgh) andYao Liang (IUPUI). From their EarthCube Concept Award Group Page: “OHMF is an open meta-modeling framework, which can integrate data and models easily and incrementally for knowledge discovery and management, for the research and applications communities (initially focused on the hydrosphere). The goal is to enable these communities to freely contribute their individual computation models, to interact with each other, as well as with different data sources.” Yao will be giving a demo of the system, which now include “agents” to access NASA, USGS and CUAHSI data.

2. Exposing CUAHSI variables as a SKOS serviceAlva Couch (CUAHSI WDC). Alva will discuss the Data Center’s plans to:
  • Expose variables via SKOS services 
  • Embed SKOS links in HIS Central Metadata
  • Return SKOS references to HIS Central queries
  • Cross-link CUAHSI SKOS other SKOS servers, including GEOSS GEMET and CUNY EDSC


Tuesday, May 7, 2013

Tomorrow's CUAHSI Informatics Community Teleconference - Expanding the HIS Technology

Please join us tomorrow, Wednesday May 8 at Noon (ET) for a CUAHSI Informatics Community Teleconference! We will have two presenters discussing projects and activities that are expanding the use of CUAHSI HIS technology and the CUAHSI Water Data Center services...

1. Demo of the Open Hydrospheric Modeling Framework (OHMF), Xu Liang (Pittsburgh) and Yao Liang (IUPUI). From their EarthCube Concept Award Group Page: “OHMF is an open meta-modeling framework, which can integrate data and models easily and incrementally for knowledge discovery and management, for the research and applications communities (initially focused on the hydrosphere). The goal is to enable these communities to freely contribute their individual computation models, to interact with each other, as well as with different data sources.” Yao will be giving a demo of the system, which now include “agents” to access NASA, USGS and CUAHSI data.

2. Exposing CUAHSI variables as a SKOS service, Alva Couch (CUAHSI WDC). Alva will discuss the Data Center’s plans to:
  • Expose variables via SKOS services 
  • Embed SKOS links in HIS Central Metadata
  • Return SKOS references to HIS Central queries
  • Cross-link CUAHSI SKOS other SKOS servers, including GEOSS GEMET and CUNY EDSC

Connection details
http://cuahsi.adobeconnect.com/his/ (have the system call you back or call the number below)
1-866-244-8528  Code: 391191


Thursday, May 2, 2013

Watch: Using CUAHSI HIS to Support Large Scale Collaborative Research in Utah


Yesterday's cyberseminar is now up on YouTube.Watch as Dr. Jeff Horsburgh (Utah State University) discusses the CUAHSI HIS and other cyberinfrastructure components of the iUTAH initiative. For a full description, please visit this earlier blog post.

This is the last talk of our spring series... A big thank you to our presenters as well as all of you who have joined us throughout the semester!


Tuesday, April 30, 2013

Tomorrow: Using CUAHSI HIS to Support Large Scale Collaborative Research in Utah

Tomorrow's HIS Cyberseminar will conclude the Spring 2013 series. We began this spring's series with the a talk about how researchers in the Northeastern US are using HIS and we will conclude the series tomorrow with an example of how researchers are using the technology out West...


Using CUAHSI HIS to Support Large Scale Collaborative Research in Utah 

Jeffery S. Horsburgh, Amber Jones, Stephanie Reeder, James Patton,
Juan Caraballo, Mauriel Ramirez, and Nathaniel Mouzon



 iUTAH (innovative Urban Transitions and Aridregion Hydro-­‐sustainability) is a statewide effort dedicated to maintaining and improving water sustainability in Utah. Synthesis of diverse data collection and modeling to support cross-­‐disciplinary and cross-­‐institutional research teams working on the iUTAH project is a challenge that requires storage, networking, computational, and human resources. The iUTAH Cyberinfrastructure Team (CI Team) is building the iUTAH Modeling and Data Federation (MDF) to support the full data life cycle and increase capacity for data collection, organization, management, sharing, synthesis to higher-­‐level products, and integration with models. The iUTAH MDF is an online system for iUTAH researchers and partners to share data, models, and other digital resources. As part of the iUTAH project, researchers from multiple Utah universities are developing a new sensor network called GAMUT (Gradients Along Mountain to Urban Transitions). The objective of GAMUT is to measure aspects of water inputs, outputs, and quality along a mountain-­‐to-­‐urban gradient in three Utah watersheds that share common water sources (winter-­‐derived precipitation) but differ in the human and biophysical nature of land-­‐use transitions. GAMUT will deploy sensors at aquatic and terrestrial sites for real-­‐time monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. The multiple watershed, multiple institution, and scale of the GAMUT network present challenges for managing and publishing the data that will be produced. The iUTAH CI Team is building and deploying cyberinfrastructure to support management of the streaming sensor data, including components of the CUAHSI Hydrologic Information System (HIS). This includes tools for automated loading of streaming data into relational databases, data models for storing and accessing the data, software tools to facilitate the data quality control process, new applications to support data management and equipment tracking by iUTAH field technicians, and tools for publishing the data on the Internet. The iUTAH CI Team is focused on developing hardware and software systems that will improve iUTAH participants’ capacity for data collection, organization, management, sharing, synthesis to higher-­‐level products, and integration with models. The iUTAH MDF is coordinating across Utah universities, including provisioning hardware that enables hosting of data publication and sharing services as well as data storage resources for redundancy and for High Performance Computing support. In this presentation, we describe ongoing work to develop the hardware and software platforms that will create better access to data and new tools for collaboration among iUTAH participants.


Connection Details:
Conference Line: (866) 244-8528
Participant Code: 391191

Either have the system call you back once you log into Adobe Connect or dial in using the conference line and participant code. 

We hope you will join us tomorrow, May 1, at 3 PM Eastern.